- Class: 3
- Architecture: 3.30:2-Layer Sandwich
- Topology: 3.30.1700:lpxc deacetylase, domain 1
- Homology: 3.30.1700.10:lpxc deacetylase, domain 2
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1p42 | [A] | [A] | [A] | 2 | MYR:MYRISTIC ACID ZN:ZINC ION | |||
1xxe | [A] | [A] | [A] | NOTAPPLICABLE. | TUX:1,5-ANHYDRO-2-C-(CARBOXYMETHYL-N-HYDROXYAMIDE)-2-DEOXY-3-O-MYRISTOYL-D-GLUCITOL ZN:ZINC ION | |||
1yh8 | [A2] | [A2] | [A2] | 2.7 | CL:CHLORIDE ION PAM:PALMITOLEIC ACID ZN:ZINC ION | |||
1yhc | [A2] | [A2] | [A2] | 2.1 | CAC:CACODYLATE ION CL:CHLORIDE ION GOL:GLYCEROL PAM:PALMITOLEIC ACID SO4:SULFATE ION ZN:ZINC ION | |||
2go3 | [A] | [A] | [A] | 2 | CL:CHLORIDE ION GOL:GLYCEROL IMD:IMIDAZOLE MYR:MYRISTIC ACID PLM:PALMITIC ACID ZN:ZINC ION | |||
2go4 | [A] | [A] | [A] | 2.7 | CL:CHLORIDE ION TUX:1,5-ANHYDRO-2-C-(CARBOXYMETHYL-N-HYDROXYAMIDE)-2-DEOXY-3-O-MYRISTOYL-D-GLUCITOL ZN:ZINC ION | |||
2ier | [A2] | [A2] | [A2] | 2.7 | GOL:GLYCEROL PLM:PALMITIC ACID UDP:URIDINE-5___sq___-DIPHOSPHATE ZN:ZINC ION | |||
2ies | [A2] | [A2] | [A2] | 3.1 | CL:CHLORIDE ION PLM:PALMITIC ACID POP:PYROPHOSPHATE 2- ZN:ZINC ION | |||
2j65 | [A] | [A] | [A] | 2.2 | CL:CHLORIDE ION MYR:MYRISTIC ACID UDP:URIDINE-5___sq___-DIPHOSPHATE ZN:ZINC ION | |||
2jt2 | [A] | [A] | [A] | NOTAPPLICABLE. | C90:N-{(1S,2R)-2-HYDROXY-1-[(HYDROXYAMINO)CARBONYL]PROPYL}-4-{[4-(MORPHOLIN-4-YLMETHYL)PHENYL]ETHYNYL}BENZAMIDE ZN:ZINC ION | |||
2o3z | [A2] | [A2] | [A2] | 2.25 | AI7:3-(HEPTYLOXY)BENZOIC ACID CL:CHLORIDE ION SO4:SULFATE ION ZN:ZINC ION | |||
2ves | [A3] | [A3] | [A3] | 1.9 | GVR:(2R)-N-HYDROXY-3-NAPHTHALEN-2-YL-2-[(NAPHTHALEN-2-YLSULFONYL)AMINO]PROPANAMIDE SO4:SULFATE ION ZN:ZINC ION | |||
3nzk | [A] | [A] | [A] | 1.8 | C90:N-{(1S,2R)-2-HYDROXY-1-[(HYDROXYAMINO)CARBONYL]PROPYL}-4-{[4-(MORPHOLIN-4-YLMETHYL)PHENYL]ETHYNYL}BENZAMIDE GOL:GLYCEROL ZN:ZINC ION | |||
3p3c | [A] | [A] | [A] | 1.25 | 3P3:N-[(1S,2R)-2-HYDROXY-1-(HYDROXYCARBAMOYL)PROPYL]-4-(4-PHENYLBUTA-1,3-DIYN-1-YL)BENZAMIDE PO4:PHOSPHATE ION ZN:ZINC ION | |||
3p3e | [A] | [A] | [A] | 1.28 | 3P3:N-[(1S,2R)-2-HYDROXY-1-(HYDROXYCARBAMOYL)PROPYL]-4-(4-PHENYLBUTA-1,3-DIYN-1-YL)BENZAMIDE NA:SODIUM ION NO3:NITRATE ION ZN:ZINC ION | |||
3p3g | [A] | [A] | [A] | 1.65 | 3P3:N-[(1S,2R)-2-HYDROXY-1-(HYDROXYCARBAMOYL)PROPYL]-4-(4-PHENYLBUTA-1,3-DIYN-1-YL)BENZAMIDE DMS:DIMETHYL SULFOXIDE SO4:SULFATE ION UKW:4-ETHYNYL-N-[(1S,2R)-2-HYDROXY-1-(OXOCARBAMOYL)PROPYL]BENZAMIDE ZN:ZINC ION | |||
3p76 | [A] | [A] | [A] | 1.93 | IMD:IMIDAZOLE P76:N-[(1S,2R)-2-HYDROXY-1-(HYDROXYCARBAMOYL)PROPYL]-4-[4-(PHENYLETHYNYL)PHENYL]PIPERIDINE-1-CARBOXAMIDE ZN:ZINC ION | |||
3ps1 | [A] | [A] | [A] | 1.85 | DMS:DIMETHYL SULFOXIDE SO4:SULFATE ION UKW:4-ETHYNYL-N-[(1S,2R)-2-HYDROXY-1-(OXOCARBAMOYL)PROPYL]BENZAMIDE ZH2:4-[4-(4-AMINOPHENYL)BUTA-1,3-DIYN-1-YL]-N-[(2S,3R)-3-HYDROXY-1-(HYDROXYAMINO)-1-OXOBUTAN-2-YL]BENZAMIDE ZN:ZINC ION | |||
3ps2 | [A] | [A] | [A] | 2.3 | DMS:DIMETHYL SULFOXIDE SO4:SULFATE ION UKW:4-ETHYNYL-N-[(1S,2R)-2-HYDROXY-1-(OXOCARBAMOYL)PROPYL]BENZAMIDE ZH4:4-[4-(3-AMINOPHENYL)BUTA-1,3-DIYN-1-YL]-N-[(2S,3R)-3-HYDROXY-1-NITROSO-1-OXOBUTAN-2-YL]BENZAMIDE ZN:ZINC ION | |||
3ps3 | [A] | [A] | [A] | 2.1 | DMS:DIMETHYL SULFOXIDE L53:4-[4-(4-AMINOPHENYL)BUTA-1,3-DIYN-1-YL]-N-[(2S,3S)-3-HYDROXY-1-NITROSO-1-OXOBUTAN-2-YL]BENZAMIDE SO4:SULFATE ION UKW:4-ETHYNYL-N-[(1S,2R)-2-HYDROXY-1-(OXOCARBAMOYL)PROPYL]BENZAMIDE ZN:ZINC ION | |||
3u1y | [A] | [A] | [A] | 2 | 03I:(2R)-N-HYDROXY-2-METHYL-2-(METHYLSULFONYL)-4-{4___sq___-[3-(MORPHOLIN-4-YL)PROPOXY]BIPHENYL-4-YL}BUTANAMIDE ZN:ZINC ION | |||
3uhm | [A] | [A] | [A] | 1.26 | EDO:1,2-ETHANEDIOL GAI:GUANIDINE RFN:(2R)-N-HYDROXY-2-METHYL-2-(METHYLSULFONYL)-4-(2-OXO-4-PHENYLPYRIDIN-1(2H)-YL)BUTANAMIDE ZN:ZINC ION | |||
4fw3 | [A] | [A] | [A] | 2.35 | GOL:GLYCEROL L52:N-[(2S)-3-AMINO-1-(HYDROXYAMINO)-1-OXOPROPAN-2-YL]-4-(4-PHENYLBUTA-1,3-DIYN-1-YL)BENZAMIDE ZN:ZINC ION | |||
4fw4 | [A] | [A] | [A] | 2.19 | 3P3:N-[(1S,2R)-2-HYDROXY-1-(HYDROXYCARBAMOYL)PROPYL]-4-(4-PHENYLBUTA-1,3-DIYN-1-YL)BENZAMIDE ACT:ACETATE ION GOL:GLYCEROL ZN:ZINC ION | |||
4fw5 | [A] | [A] | [A] | 1.99 | ACT:ACETATE ION GOL:GLYCEROL L58:4___sq___-BROMO-N-[(2S,3R)-3-HYDROXY-1-(HYDROXYAMINO)-1-OXOBUTAN-2-YL]BIPHENYL-4-CARBOXAMIDE ZN:ZINC ION | |||
4fw6 | [A] | [A] | [A] | 1.83 | ACT:ACETATE ION GOL:GLYCEROL L59:N-[(2S,3R)-3-HYDROXY-1-(HYDROXYAMINO)-1-OXOBUTAN-2-YL]-4-(PHENYLETHYNYL)BENZAMIDE NA:SODIUM ION PEG:DI(HYDROXYETHYL)ETHER ZN:ZINC ION | |||
4fw7 | [A] | [A] | [A] | 1.7 | ACT:ACETATE ION GOL:GLYCEROL L63:N-[(2S,3R)-3-HYDROXY-1-(HYDROXYAMINO)-1-OXOBUTAN-2-YL]BIPHENYL-4-CARBOXAMIDE ZN:ZINC ION | |||
4is9 | [A] | [A] | [A] | 2.13 | IPA:ISOPROPYL ALCOHOL LTF:(4R)-2-(3,4-DIMETHOXY-5-PROPYLPHENYL)-N-HYDROXY-4,5-DIHYDRO-1,3-OXAZOLE-4-CARBOXAMIDE NA:SODIUM ION ZN:ZINC ION | |||
4isa | [A] | [A] | [A] | 1.8 | D1D:(4S,5S)-1,2-DITHIANE-4,5-DIOL FMT:FORMIC ACID GVR:(2R)-N-HYDROXY-3-NAPHTHALEN-2-YL-2-[(NAPHTHALEN-2-YLSULFONYL)AMINO]PROPANAMIDE ZN:ZINC ION | |||
4j3d | [A] | [A] | [A] | 2 | 1JS:N~1~-HYDROXY-N~5~-(3-HYDROXYPROPYL)-N~2~-[4-(PHENYLETHYNYL)BENZOYL]-L-GLUTAMAMIDE ZN:ZINC ION | |||
4lcf | [A] | [A] | [A] | 1.6 | 1WL:NALPHA-{4-[4-(4-AMINOPHENYL)BUTA-1,3-DIYN-1-YL]BENZOYL}-N-HYDROXY-L-HISTIDINAMIDE NO3:NITRATE ION ZN:ZINC ION | |||
4lcg | [A] | [A] | [A] | 1.57 | 1WM:(BETAS)-NALPHA-{4-[4-(4-AMINOPHENYL)BUTA-1,3-DIYN-1-YL]BENZOYL}-N,BETA-DIHYDROXY-L-TYROSINAMIDE NO3:NITRATE ION ZN:ZINC ION | |||
4lch | [A] | [A] | [A] | 1.6 | 1WN:(BETAS)-NALPHA-{4-[4-(4-AMINOPHENYL)BUTA-1,3-DIYN-1-YL]BENZOYL}-N,BETA-DIHYDROXY-BETA-METHYL-L-TYROSINAMIDE NO3:NITRATE ION ZN:ZINC ION | |||
4mdt | [A] | [A] | [A] | 2.59 | 24G:URIDINE-5___sq___-DIPHOSPHATE-3-O-(R-3-HYDROXYMYRISTOYL)-GLUCOSAMINE PO4:PHOSPHATE ION ZN:ZINC ION | |||
4mqy | [A] | [A] | [A] | 2.01 | 2CW:4-[4-(4-AMINOPHENYL)BUTA-1,3-DIYN-1-YL]-N-[(2S,3R)-3-HYDROXY-2-METHYL-1-NITROSO-1-OXOBUTAN-2-YL]BENZAMIDE DMS:DIMETHYL SULFOXIDE SO4:SULFATE ION UKW:4-ETHYNYL-N-[(1S,2R)-2-HYDROXY-1-(OXOCARBAMOYL)PROPYL]BENZAMIDE ZN:ZINC ION | |||
4okg | [A] | [A] | [A] | 2.06 | 2SZ:6-(1H-BENZIMIDAZOL-1-YL)-N-HYDROXY-5-[4-({6-[(4-METHYLPIPERAZIN-1-YL)METHYL]PYRIDIN-3-YL}ETHYNYL)PHENYL]PYRIDINE-3-CARBOXAMIDE ZN:ZINC ION | |||
4oze | [A] | [A] | [A] | 1.61 | 24G:URIDINE-5___sq___-DIPHOSPHATE-3-O-(R-3-HYDROXYMYRISTOYL)-GLUCOSAMINE CL:CHLORIDE ION ZN:ZINC ION | |||
4u3b | [A] | [A] | [A] | 1.34 | 3BW:4-({[4-(4-CHLOROPHENOXY)PHENYL]SULFANYL}METHYL)-N-HYDROXYTETRAHYDRO-2H-PYRAN-4-CARBOXAMIDE CL:CHLORIDE ION IMD:IMIDAZOLE ZN:ZINC ION | |||
4u3d | [A] | [A] | [A] | 1.25 | 3BX:N-HYDROXY-4-[(4-{[4-(MORPHOLIN-4-YLMETHYL)PHENYL]ETHYNYL}PHENOXY)METHYL]TETRAHYDRO-2H-PYRAN-4-CARBOXAMIDE CL:CHLORIDE ION IMD:IMIDAZOLE ZN:ZINC ION | |||
5dro | [A] | [A] | [A] | 2.01 | ACT:ACETATE ION DMS:DIMETHYL SULFOXIDE ZH2:4-[4-(4-AMINOPHENYL)BUTA-1,3-DIYN-1-YL]-N-[(2S,3R)-3-HYDROXY-1-(HYDROXYAMINO)-1-OXOBUTAN-2-YL]BENZAMIDE ZN:ZINC ION | |||
5drp | [A] | [A] | [A] | 1.89 | 5EP:N~2~-{4-[4-(4-AMINOPHENYL)BUTA-1,3-DIYN-1-YL]BENZOYL}-N-HYDROXY-L-ISOLEUCINAMIDE CL:CHLORIDE ION DMS:DIMETHYL SULFOXIDE ZN:ZINC ION | |||
5drq | [A] | [A] | [A] | 1.63 | 5EM:N-[(2S)-3-AMINO-1-(HYDROXYAMINO)-3-METHYL-1-OXOBUTAN-2-YL]-4-[4-(4-AMINOPHENYL)BUTA-1,3-DIYN-1-YL]BENZAMIDE NO3:NITRATE ION ZN:ZINC ION | |||
5drr | [A] | [A] | [A] | 1.59 | 5EN:4-[4-(4-AMINOPHENYL)BUTA-1,3-DIYN-1-YL]-N-[(2S,3S)-4,4-DIFLUORO-3-HYDROXY-1-(HYDROXYAMINO)-3-METHYL-1-OXOBUTAN-2-YL]BENZAMIDE NO3:NITRATE ION ZN:ZINC ION | |||
5n8c | [A] | [A] | [A] | 1.9 | 8Q8:(2~{S})-3-AZANYL-2-[[(1~{R})-5-[2-[4-[[2-(HYDROXYMETHYL)IMIDAZOL-1-YL]METHYL]PHENYL]ETHYNYL]-2,3-DIHYDRO-1~{H}-INDEN-1-YL]AMINO]-3-METHYL-~{N}-OXIDANYL-BUTANAMIDE CL:CHLORIDE ION ZN:ZINC ION | |||
5u39 | [A] | [A] | [A] | 1.75 | C90:N-{(1S,2R)-2-HYDROXY-1-[(HYDROXYAMINO)CARBONYL]PROPYL}-4-{[4-(MORPHOLIN-4-YLMETHYL)PHENYL]ETHYNYL}BENZAMIDE ZN:ZINC ION | |||
5u3b | [A] | [A] | [A] | 2 | 7TD:N-[(2S)-3-AMINO-1-(HYDROXYAMINO)-3-METHYL-1-OXOBUTAN-2-YL]-4-[(BUT-2-YN-1-YL)OXY]BENZAMIDE EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID ZN:ZINC ION | |||
5u86 | [A] | [A] | [A] | 1.62 | 81V:N-[(2S,3S)-4,4-DIFLUORO-3-HYDROXY-1-(HYDROXYAMINO)-3-METHYL-1-OXOBUTAN-2-YL]-4-({4-[(MORPHOLIN-4-YL)METHYL]PHENYL}ETHYNYL)BENZAMIDE CL:CHLORIDE ION EDO:1,2-ETHANEDIOL PO4:PHOSPHATE ION ZN:ZINC ION | |||
5upg | [A] | [A] | [A] | 1.7 | 8GJ:(2R)-4-[4-(2-FLUORO-4-METHOXYPHENYL)-2-OXOPYRIDIN-1(2H)-YL]-N-HYDROXY-2-METHYL-2-(METHYLSULFONYL)BUTANAMIDE CL:CHLORIDE ION EDO:1,2-ETHANEDIOL ZN:ZINC ION | |||
5vwm | [A] | [A] | [A] | 1.8 | C90:N-{(1S,2R)-2-HYDROXY-1-[(HYDROXYAMINO)CARBONYL]PROPYL}-4-{[4-(MORPHOLIN-4-YLMETHYL)PHENYL]ETHYNYL}BENZAMIDE CA:CALCIUM ION CL:CHLORIDE ION EDO:1,2-ETHANEDIOL ZN:ZINC ION | |||
6c9c | [A] | [A] | [A] | 2 | EDO:1,2-ETHANEDIOL EU1:(2R)-4-[4-{4-[(5-CHLORO-6-METHOXYPYRIDIN-3-YL)METHOXY]PHENYL}-2-OXO-3,6-DIHYDROPYRIDIN-1(2H)-YL]-N-HYDROXY-2-METHYL-2-(METHYLSULFONYL)BUTANAMIDE F64:(2S)-4-[4-{4-[(5-CHLORO-6-METHOXYPYRIDIN-3-YL)METHOXY]PHENYL}-2-OXO-3,6-DIHYDROPYRIDIN-1(2H)-YL]-N-HYDROXY-2-METHYL-2-(METHYLSULFONYL)BUTANAMIDE ZN:ZINC ION | |||
6cax | [A] | [A] | [A] | 1.25 | CL:CHLORIDE ION EDO:1,2-ETHANEDIOL EUY:(2R)-N-HYDROXY-2-METHYL-2-(METHYLSULFONYL)-4-{2-OXO-4-[4-(2H-1,2,3-TRIAZOL-2-YL)PHENYL]PYRIDIN-1(2H)-YL}BUTANAMIDE ZN:ZINC ION | |||
6ih0 | [A] | [A] | [A] | 1.21 | A5F:N-[(2S)-3-AZANYL-3-METHYL-1-(OXIDANYLAMINO)-1-OXIDANYLIDENE-BUTAN-2-YL]-4-[4-[(1R,2R)-2-(HYDROXYMETHYL)CYCLOPROPYL]BUTA -1,3-DIYNYL]BENZAMIDE A5U:METHYL (2S)-2-AZANYL-3-METHYL-3-[(2-METHYLPROPAN-2-YL)OXYCARBONYLAMINO]BUTANOATE ZN:ZINC ION | |||
6mae | [A] | [A] | [A] | 1.8 | JBA:(2R)-3-{(5S)-3-[4-(CYCLOPROPYLETHYNYL)PHENYL]-2-OXO-1,3-OXAZOLIDIN-5-YL}-N-HYDROXY-2-METHYL-2-(METHYLSULFONYL)PROPANAMIDE ZN:ZINC ION |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA